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Makefile [file]

R-cran-Biobase [dir]

R-cran-BiocGenerics [dir]

R-cran-BiocManager [dir]

abyss [dir]

ad2vcf [dir]

andi [dir]

artemis [dir]

atac-seq [dir]

augustus [dir]

avida [dir]

babel [dir]

bamtools [dir]

bamutil [dir]

barrnap [dir]

bbmap [dir]

bcf-score [dir]

bcftools [dir]

bedtools [dir]

bfc [dir]

bifrost [dir]

bio-mocha [dir]

bioawk [dir]

biococoa [dir]

biolibc [dir]

biolibc-tools [dir]

bioparser [dir]

biosig [dir]

biosoup [dir]

biostar-tools [dir]

bolt-lmm [dir]

bowtie [dir]

bowtie2 [dir]

btllib [dir]

bwa [dir]

canu [dir]

cd-hit [dir]

cdbfasta [dir]

checkm [dir]

chip-seq [dir]

clustal-omega [dir]

clustalw [dir]

coverm [dir]

cufflinks [dir]

cytoscape [dir]

ddocent [dir]

diamond [dir]

dsr-pdb [dir]

edlib [dir]

emboss [dir]

erminej [dir]

exonerate [dir]

fasda [dir]

fasta [dir]

fasta3 [dir]

fastahack [dir]

fastani [dir]

fastdnaml [dir]

fastool [dir]

fastp [dir]

fastq-trim [dir]

fastqc [dir]

fasttree [dir]

fastx-toolkit [dir]

fermi-lite [dir]

figtree [dir]

flash [dir]

fluctuate [dir]

freebayes [dir]

garlic [dir]

gatk [dir]

gcta [dir]

gemma [dir]

generand [dir]

gff2ps [dir]

gffread [dir]

gkl [dir]

gmap [dir]

gperiodic [dir]

graphlan [dir]

groopm [dir]

haplohseq [dir]

hhsuite [dir]

hisat2 [dir]

hmmer [dir]

htslib [dir]

hyphy [dir]

igv [dir]

infernal [dir]

iolib [dir]

iqtree [dir]

jalview [dir]

jellyfish [dir]

kallisto [dir]

kmcp [dir]

lamarc [dir]

libbigwig [dir]

libcombine [dir]

libgff [dir]

libgtextutils [dir]

libneurosim [dir]

libnuml [dir]

libsbml [dir]

libsedml [dir]

linux-foldingathome [dir]

locarna [dir]

mafft [dir]

mapm3 [dir]

mashmap [dir]

mca-calling [dir]

megahit [dir]

metaeuk [dir]

migrate [dir]

minimap2 [dir]

mmseqs2 [dir]

molden [dir]

mothur [dir]

mrbayes [dir]

mummer [dir]

muscle [dir]

ncbi-blast+ [dir]

ncbi-cxx-toolkit [dir]

ncbi-entrez-direct [dir]

ncbi-toolkit [dir]

ngs-sdk [dir]

p5-AcePerl [dir]

p5-Bio-ASN1-EntrezGene [dir]

p5-Bio-Cluster [dir]

p5-Bio-Coordinate [dir]

p5-Bio-DB-EMBL [dir]

p5-Bio-DB-NCBIHelper [dir]

p5-Bio-Das [dir]

p5-Bio-Das-Lite [dir]

p5-Bio-FeatureIO [dir]

p5-Bio-GFF3 [dir]

p5-Bio-Glite [dir]

p5-Bio-Graphics [dir]

p5-Bio-MAGETAB [dir]

p5-Bio-NEXUS [dir]

p5-Bio-Phylo [dir]

p5-Bio-SCF [dir]

p5-Bio-Variation [dir]

p5-BioPerl [dir]

p5-BioPerl-Run [dir]

p5-TrimGalore [dir]

p5-transdecoder [dir]

paml [dir]

pbbam [dir]

peak-classifier [dir]

pear-merger [dir]

phrap [dir]

phred [dir]

phyml [dir]

picard-tools [dir]

plink [dir]

pooler [dir]

preseq [dir]

primer3 [dir]

prodigal [dir]

prodigy-lig [dir]

protomol [dir]

psi88 [dir]

py-Genesis-PyAPI [dir]

py-PySCeS [dir]

py-bcbio-gff [dir]

py-biom-format [dir]

py-biopython [dir]

py-biosig [dir]

py-bx-python [dir]

py-crossmap [dir]

py-cutadapt [dir]

py-deeptools [dir]

py-deeptoolsintervals [dir]

py-dna-features-viewer [dir]

py-dnaio [dir]

py-ete3 [dir]

py-gffutils [dir]

py-goatools [dir]

py-gtfparse [dir]

py-hits [dir]

py-htseq [dir]

py-libnuml [dir]

py-libsedml [dir]

py-loompy [dir]

py-macs2 [dir]

py-macs3 [dir]

py-mrcfile [dir]

py-multiqc [dir]

py-newick [dir]

py-ont-fast5-api [dir]

py-orange3-bioinformatics [dir]

py-orange3-single-cell [dir]

py-pandas-charm [dir]

py-py2bit [dir]

py-pybigwig [dir]

py-pyfaidx [dir]

py-pyrodigal [dir]

py-pysam [dir]

py-python-libsbml [dir]

py-pywgsim [dir]

py-resdk [dir]

py-scikit-bio [dir]

py-valerius [dir]

py-xenaPython [dir]

pyfasta [dir]

python-nexus [dir]

rainbow [dir]

rampler [dir]

readseq [dir]

rna-seq [dir]

ruby-bio [dir]

rubygem-bio [dir]

rubygem-bio-executables [dir]

rubygem-bio-old-biofetch-emulator [dir]

rubygem-bio-shell [dir]

salmon [dir]

sam2pairwise [dir]

samtools [dir]

scrm [dir]

seaview [dir]

seqan [dir]

seqan-apps [dir]

seqan1 [dir]

seqan3 [dir]

seqkit [dir]

seqtk [dir]

seqwish [dir]

sigviewer [dir]

slclust [dir]

smithwaterman [dir]

snpeff [dir]

spoa [dir]

sra-tools [dir]

stacks [dir]

star [dir]

stringtie [dir]

subread [dir]

tRNAscan-SE [dir]

tabixpp [dir]

taxonkit [dir]

treekin [dir]

treepuzzle [dir]

trimadap [dir]

trimmomatic [dir]

ucsc-userapps [dir]

ugene [dir]

unikmer [dir]

vcf-split [dir]

vcf2hap [dir]

vcflib [dir]

vcftools [dir]

velvet [dir]

viennarna [dir]

vsearch [dir]

vt [dir]

wfa2-lib [dir]

wise [dir]

/usr/ports/biology